Jobs · Analyst · California

Protein Scientist, Assistant Director or Associate Director

Ionis Pharmaceuticals, Inc. · Carlsbad, CA · 2 wk ago
On-siteAnalyst$144k–$196k/yrFull-time

Summary

We are seeking a highly motivated protein scientist for an Assistant Director or Associate Director role to lead and advance protein discovery and production efforts supporting protein-oligonucleotide conjugate programs.

Key Responsibilities

  • Lead design, engineering, expression, purification, and characterization of protein ligands and protein fusion constructs intended for protein-oligonucleotide conjugates

  • Translate hits from primary screening campaigns into optimized lead molecules with improved expression, stability, manufacturability, and functional performance

  • Develop and execute protein production strategies, selecting fit-for-purpose platforms based on construct requirements and downstream use

  • Design fusion proteins and other engineered constructs suitable for scale-up and conjugation workflows

  • Oversee purification and analytical characterization of recombinant proteins, including assessment of integrity, aggregation, binding, and stability

  • Work closely with oligonucleotide chemistry and conjugation teams to ensure protein constructs are compatible with conjugation requirements and downstream process needs

  • Drive experimental strategy, data interpretation, and decision-making across multiple programs

  • Mentor scientists and research associates as appropriate and contribute to building scientific capability in protein engineering and production

  • Present results and recommendations clearly to cross-functional teams and senior leadership

  • Hands-on laboratory based effort will be expected

Requirements

  • PhD in protein science, biochemistry, molecular biology, chemical biology, bioengineering, or related discipline, with relevant industry experience

  • For the Assistant Director position, at least 5 years of relevant industry experience

  • For the Associate Director position, at least 8 years of relevant experience

  • Significant hands-on experience in recombinant protein expression and purification in both microbial and mammalian systems

  • Demonstrated expertise in protein engineering and design, including construct optimization for expression, stability, and function

  • Strong track record of advancing protein molecules from early discovery or screening through lead optimization and scale-up

  • Experience generating and evaluating protein fusions or other complex engineered protein formats

  • Experience with analytical methods used for protein characterization

  • Strong scientific judgment, experimental rigor, and problem-solving ability in a fast-moving research environment

  • Excellent written and verbal communication skills and ability to work effectively across disciplines

  • Excellent track record of publications

  • Able to manage multiple assignments effectively in a quickly evolving environment

  • An entrepreneurial spirit; enthusiasm and vision for converting cutting-edge science into commercial applications

Preferred Qualifications

  • Experience supporting protein-based ligand discovery programs

  • Experience with protein constructs intended for bioconjugation or oligonucleotide conjugation

  • Familiarity with protein structure-guided design, computational design tools, or directed evolution approaches

  • Experience scaling protein production to support preclinical or development-stage studies

  • Prior leadership experience in matrixed, cross-functional research teams

  • Experience working at the interface of protein engineering, conjugation chemistry, and therapeutic platform development

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