Postdoctoral Research Associate, Cellular and Molecular Medicine
University of Arizona · Tucson, AZ · 3 wk ago
Information TechnologyFull-time
Duties & Responsibilities
- Design and execute experiments using primary human endothelial cells hemodynamic shear stress conditions.
- Prepare and QC sequencing libraries including bulk RNA-seq, small RNA-seq, ATAC-seq, and single-cell libraries.
- Perform genome-scale quantitative trait locus (QTL) mapping analyses and genetic colocalization with genome wide association study (GWAS) summary statistics.
- Analyze single-cell and bulk genomics datasets using standard and custom bioinformatics pipelines.
- Contribute to grant writing, manuscript preparation, and presentations at national conferences.
- Mentor and support graduate students and other members of the laboratory.
Knowledge, Skills & Abilities
- Ability operating shear stress devices (cone-and-plate and parallel-plate systems) in a laboratory setting.
- Proficiency in sequencing library preparation, including bulk RNA-seq, small RNA-seq, ATAC-seq, and single-cell sequencing protocols (10x Genomics and sci-RNA-seq3).
- Knowledge of genetic colocalization methods using GWAS and molecular QTL summary statistics.
- Working knowledge of large-scale biobank resources, particularly the All of Us Research Program and phenome-wide association study (PheWAS) frameworks.
- Biological knowledge of vascular cell types, endothelial function, and the pathobiology of atherosclerosis.
Minimum Qualifications
- Doctoral degree (Ph.D.) in human genetics, genomics, molecular biology, cell biology, or a closely related field, conferred prior to the start date.
- At least one first-author publication in a peer-reviewed journal in genetics, genomics, or vascular/cell biology.
- Demonstrated experience with next-generation sequencing data analysis, including RNA-seq or single-cell RNA-seq.
- Proficiency in at least one scripting or programming language used in genomics (R, Python, or Bash/Unix).
- Experience with primary mammalian cell culture in a BSL-2 laboratory setting.
Preferred Qualifications
- Experience culturing primary human endothelial cells, including aortic or microvascular subtypes.
- Experience with CRISPR-based functional assays or other molecular perturbation approaches in human cell lines.
- Experience with single-cell genomics analysis experience spanning preprocessing, dimensionality reduction, clustering, differential expression, and batch effect correction.
- Experience with QTL mapping (eQTL, sQTL, caQTL) including pipeline development and interpretation of cis-regulatory results.
- Strong publication record in genetics or vascular biology, with contributions to high-impact journals.
- Experience presenting original research at national scientific conferences (e.g., ASHG, NAVBO, AHA).
- History of mentoring junior researchers (undergraduate or graduate students) in laboratory or computational settings.
Benefits
Outstanding U of A benefits include health, dental, vision, and life insurance; paid vacation, sick leave, and holidays; UA/ASU/NAU tuition reduction for the employee and qualified family members; access to UA recreation and cultural activities; and more!