Bioinformatic Specialist – Lim Lab

Primary work address: Department of Molecular Biology, Princeton University, Princeton, NJ 08544. This is a part-time (20 hours per week), in-person position.

About the Role

The Lim Laboratory is seeking a motivated and collaborative Bioinformatics Specialist to contribute to the computational aspects of our research program. The position will focus on two major areas:

• Large-scale human data analysis to investigate relationships between reproductive history and disease outcomes.
• Computational analysis of experimental datasets generated within the laboratory, including single-cell RNA-seq, single-cell ATAC-seq, spatial transcriptomics, epigenomic datasets, and microbiome sequencing.

The successful candidate will work closely with the PI and experimental scientists in the laboratory to develop analytical strategies, interpret complex datasets, and connect computational findings with biological questions. We are particularly interested in someone who enjoys thinking collaboratively about biology and using computational approaches to uncover new biological insights.

The Lim Lab studies the immune system during reproduction and development, combining experimental models, human studies, and high-dimensional genomic approaches. Our work integrates immunology, stem cell biology, host–microbiome interactions, and reproductive biology to understand how pregnancy and lactation alter immune and tissue states and how maternal exposures influence offspring long-term health and disease.

Responsibilities

• Analyze large-scale human datasets to investigate associations between reproductive history, immune phenotypes, and disease outcomes.
• Develop and apply reproducible computational workflows for large-scale human data analysis and facilitate expansion to additional datasets and cohorts.
• Collaborate with experimental scientists to design analytical strategies for high-dimensional datasets generated in the laboratory.
• Analyze and integrate single-cell RNA-seq, scATAC-seq, and other single-cell or multi-omic datasets.
• Analyze spatial transcriptomic datasets, including platforms such as Xenium.
• Analyze epigenomic datasets, including CUT&Tag and related approaches.
• Analyze microbiome sequencing datasets and integrate microbiome features with immune and tissue phenotypes.
• Apply appropriate statistical and computational approaches to identify biologically meaningful patterns and relationships across complex datasets.
• Develop reproducible and well-documented analytical pipelines and work with trainees to enable their use and extension across projects.
• Work closely with trainees to interpret results and communicate computational findings clearly.
• Contribute intellectually to research projects, manuscripts, and presentations.

Requirements

• Bachelor’s or master’s degree in bioinformatics, Computational Biology, Biostatistics, Data Science, or a related quantitative field.
• Strong programming skills in R and/or Python.
• Experience analyzing large-scale genomic, transcriptomic, or human datasets.
• Experience with one or more of the following is highly desirable: single-cell RNA-seq, scATAC-seq, spatial transcriptomics, epigenomic analysis, microbiome analysis, or large human cohort datasets.
• Strong quantitative reasoning and familiarity with statistical approaches for complex biological or human data.
• Ability to develop reproducible computational workflows and work with large datasets.
• Strong interest in biology and an ability to work collaboratively with experimental scientists.
• Excellent analytical, problem-solving, and communication skills.

Experience in every analytical area listed above is not required. We particularly value candidates with strong quantitative foundations, intellectual curiosity, and an interest in learning and applying new computational approaches to biological questions.

Physical Requirements

• Remaining in a normal seated or standing position for extended periods of time.
• Reaching and grasping by extending hand(s) or arm(s).
• Dexterity to manipulate objects with fingers, for example using a keyboard.
• Communication skills using the spoken word.
• Ability to see and hear within normal parameters.
• Ability to move about workspace, including moving materials weighing up to several pounds (such as a laptop computer or tablet).

Persons with disabilities may be able to perform the essential duties of this position with reasonable accommodation.

Pay

Hiring pay range: $100,430.00 - $125,500.00 per year.

Benefits

HHMI employees are compensated from a total rewards perspective, including competitive pay, exceptional health benefits, retirement plans, time off, and a range of recognition and wellness programs. Visit HHMI Benefits for more information.