Jobs · Engineering · Indiana

Senior Data Scientist – Cell-Free RNA Sequencing Read More

Superfluid Dx, Inc. · Indiana, United States · 1 wk ago
Engineering$160k–$190k/yrFull-time

Responsibilities

  • Lead innovation in secondary and tertiary analysis of cf-RNA sequencing data, focusing on delivering rigorous and reproducible results
  • Develop and implement advanced methods for differential gene expression analysis, pathway analysis, and enrichment analysis, optimizing for accuracy and biological insights
  • Build, train, test, and validate predictive models, including logistic regression, random forests, and neural networks, as well as leverage existing RNA-seq large language models (LLMs) for inference and analysis
  • Design and build scalable, efficient data analysis pipelines
  • Engage in hypothesis-driven research, rigorously testing and validating new methods and models
  • Critically evaluate results, ensuring robust models that are applicable in real-world clinical contexts beyond academic publications
  • Visualize complex datasets and create compelling narratives to communicate findings to both scientific and executive audiences
  • Collaborate with cross-functional teams, contributing to the company’s overall scientific and technical strategy

Qualifications

  • PhD in a quantitative field with a strong focus on biological sciences (e.g., Applied Statistics, Biophysics, Computational Biology)
  • Postdoctoral experience is highly desirable
  • 5+ years of biotech industry experience with a proven track record of leading successful projects
  • Expertise in gene expression data analysis, including count table filtering, normalization strategies, noise quantification, differential expression analysis, and dimensionality reduction
  • Strong foundation in statistical principles and rigorous application; including, but not limited to, hypothesis testing, P-value corrections, Bayesian approaches, bootstrapping, and permutation testing
  • Extensive experience in building, training, testing, and validating machine learning and deep learning models, including model selection based on comparative analysis and performance metrics
  • Proficient in feature set development (selection, engineering, etc.) and skilled in updating and performing inference with RNA-seq-specific large language models (LLMs)
  • Ability to innovate both in applying library methods and developing algorithms from scratch
  • Experience with common data science infrastructure, including pipelines, clusters, databases, and feature stores; direct experience with cloud platforms (AWS preferred) for scaling, deploying, and managing data workflows is a strong advantage
  • Proficient in Python and Unix/Linux environments; additional proficiency in other languages (e.g. R, Julia, Rust) is a strong plus
  • Strong coding skills across the software development lifecycle
  • Deep scientific curiosity and a solid grasp of the scientific method, hypothesis testing, and model validation
  • Passion for building predictive and prognostic models that perform effectively in real-world applications
  • Independent research capabilities, with the ability to drive projects with minimal supervision
  • Exceptional data visualization skills and the ability to translate complex datasets into actionable insights
  • Excellent communication skills, with the ability to message both technical and executive-level audiences

Pay

The estimated salary range for this role is $160,000–$190,000 and is based on a number of factors including experience and qualifications.

Benefits

  • Meaningful pre-IPO equity
  • Comprehensive benefits package

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