Scientific Software Developer II – Modeler

About the role

This role is within OpenEye, a division of Cadence Design Systems, focusing on computational chemistry and molecular modeling. The position involves developing workflows for relative binding free energy calculations, exploring machine learning models, and working with Orion, a cloud-native molecular modeling platform.

Responsibilities

• Develop highly scalable and integrated workflows for relative binding free energy workflows in lead optimization
• Explore machine learning models such as 3D-QSAR using large-scale relative binding free energy calculations
• Develop data-driven models using 2D cheminformatics and 3D molecular shape representations
• Work on retrospective and prospective projects both internally and with collaborators to validate methodologies
• Work with Orion project team to further optimize compound design workflows in Orion

Requirements

• PhD (or equivalent experience) in computational chemistry, chemistry, or related field with 0 – 5 years relevant experience
• Knowledge of molecular dynamics simulations, binding free energy calculations, protein-ligand interactions, or machine learning
• Experience in designing hypothesis-driven computational experiments, and data-driven decision making
• Programming expertise, ideally in Python, preferably with experience using AI coding agents
• Strong desire to learn about customer problems and find practical solutions
• Demonstrated ability to work both as part of a team and independently

Qualifications

• Experience with OpenEye software/toolkits
• Expertise with traditional machine learning and modern deep learning methods
• Experience with synthetically accessible, pharmaceutically relevant generative chemistry

Skills

• Strong problem-solving skills
• Excellent communication and collaboration skills
• Ability to work independently and as part of a team

Benefits

• Competitive salary
• Flexible work schedule
• Professional development opportunities
• Health and wellness programs

Pay

Competitive salary based on experience and qualifications

Schedule

Full-time, flexible schedule to accommodate professional and personal needs