Jobs · Information Technology · Massachusetts

Computational Scientist, Assay Development

Manifold Bio · Boston, MA · 5 days ago
Information Technology$118k–$138k/yrFull-time

Responsibilities

  • Invent new quantitative protein engineering assays working with experimental scientists
  • Build robust data pipelines with rich metrics and statistics for real-time dataset analysis and reporting
  • Perform analysis and "hit calling" support, contributing new insights to active projects
  • Improve library design workflows to best co-optimize antibody libraries for enhanced performance
  • Write and contribute robust code in shared libraries for common protein design tasks
  • Collaborate on designing high-throughput experiments and analyze/interpret results from phage display (biopanning, phi-seq, in vivo) and yeast display platforms
  • Deliver high-quality data reporting through slides and documentation for cross-functional teams
  • Proactively share findings with colleagues through excellent documentation and discussions

Required Qualifications

  • PhD and/or 4+ years of equivalent experience in computational biology, bioinformatics, protein engineering, antibody engineering, or similar field working with biological sequences
  • Rich experience with Python, agentic coding, data pipeline development
  • Familiarity with version control, test-driven development, and Unix computing
  • Strong antibody engineering background with first-hand experience in antibody design, optimization, or discovery
  • Experience with massively parallel reporter assays (MPRAs) and high-throughput screening data analysis
  • Experience designing DNA libraries for binders, DMS, phage display, or equivalent high-throughput experiments
  • Experience working with Next Generation Sequencing (NGS) data from library-based experiments
  • Strong understanding of statistics fundamentals and data analysis methodologies
  • Outstanding written and verbal communication skills for cross-functional collaboration

Preferred Qualifications

  • Intuition or exposure to best practices in software/data engineering
  • Industry experience in antibody therapeutic development or biotechnology R&D
  • Track record of developing computational tools or pipelines adopted by experimental teams
  • Experience mentoring junior scientists or leading cross-functional project teams
  • Publishations or patents in antibody engineering, protein design, or high-throughput screening methods
  • Familiarity with cloud computing platforms (AWS, GCP) and containerization technologies

Pay

Base Salary Range: $118,000-138,000

This reflects the typical offer range for this role, based on experience, role scope, and internal equity. Final compensation decisions are made using a consistent leveling framework and consider the candidate’s experience, interview performance, and expected impact.

Benefits

  • Annual performance-based target bonus
  • Stock options
  • Comprehensive medical, dental, and vision coverage
  • 401(k) plan
  • Flexible paid time off and holidays
  • Perks including on-site gym, onsite lunch, and commuter support

Schedule

This role is eligible for:

  • Annual performance-based target bonus
  • Stock options
  • Comprehensive medical, dental, and vision coverage
  • 401(k) plan
  • Flexible paid time off and holidays
  • Perks including on-site gym, onsite lunch, and commuter support

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