Computational Scientist, Assay Development
Manifold Bio · Boston, MA · 5 days ago
Information Technology$118k–$138k/yrFull-time
Responsibilities
- Invent new quantitative protein engineering assays working with experimental scientists
- Build robust data pipelines with rich metrics and statistics for real-time dataset analysis and reporting
- Perform analysis and "hit calling" support, contributing new insights to active projects
- Improve library design workflows to best co-optimize antibody libraries for enhanced performance
- Write and contribute robust code in shared libraries for common protein design tasks
- Collaborate on designing high-throughput experiments and analyze/interpret results from phage display (biopanning, phi-seq, in vivo) and yeast display platforms
- Deliver high-quality data reporting through slides and documentation for cross-functional teams
- Proactively share findings with colleagues through excellent documentation and discussions
Required Qualifications
- PhD and/or 4+ years of equivalent experience in computational biology, bioinformatics, protein engineering, antibody engineering, or similar field working with biological sequences
- Rich experience with Python, agentic coding, data pipeline development
- Familiarity with version control, test-driven development, and Unix computing
- Strong antibody engineering background with first-hand experience in antibody design, optimization, or discovery
- Experience with massively parallel reporter assays (MPRAs) and high-throughput screening data analysis
- Experience designing DNA libraries for binders, DMS, phage display, or equivalent high-throughput experiments
- Experience working with Next Generation Sequencing (NGS) data from library-based experiments
- Strong understanding of statistics fundamentals and data analysis methodologies
- Outstanding written and verbal communication skills for cross-functional collaboration
Preferred Qualifications
- Intuition or exposure to best practices in software/data engineering
- Industry experience in antibody therapeutic development or biotechnology R&D
- Track record of developing computational tools or pipelines adopted by experimental teams
- Experience mentoring junior scientists or leading cross-functional project teams
- Publishations or patents in antibody engineering, protein design, or high-throughput screening methods
- Familiarity with cloud computing platforms (AWS, GCP) and containerization technologies
Pay
Base Salary Range: $118,000-138,000
This reflects the typical offer range for this role, based on experience, role scope, and internal equity. Final compensation decisions are made using a consistent leveling framework and consider the candidate’s experience, interview performance, and expected impact.
Benefits
- Annual performance-based target bonus
- Stock options
- Comprehensive medical, dental, and vision coverage
- 401(k) plan
- Flexible paid time off and holidays
- Perks including on-site gym, onsite lunch, and commuter support
Schedule
This role is eligible for:
- Annual performance-based target bonus
- Stock options
- Comprehensive medical, dental, and vision coverage
- 401(k) plan
- Flexible paid time off and holidays
- Perks including on-site gym, onsite lunch, and commuter support