Bioinformatics Pipeline Test Engineer

Key Responsibilities

• Design and execute testing strategies for NGS pipelines (alignment, variant calling, annotation)
• Perform data validation, regression testing, and discrepancy analysis
• Develop automated test scripts (Python)
• Translate requirements into test cases and validation criteria
• Work with CI/CD pipelines and cloud-based workflows
• Collaborate with cross-functional teams to ensure data accuracy and reliability

Required Skills

• Strong understanding of NGS workflows (FASTQ, BAM, VCF)
• Experience in bioinformatics pipeline testing or QA
• Proficiency in Python scripting
• Hands-on with Git and CI/CD tools
• Experience with cloud platforms (AWS/GCP/Azure) and data pipelines
• Strong problem-solving and communication skills

Preferred

• Experience in biotech/life sciences domain
• Familiarity with Nextflow, Snakemake, or similar workflows
• Exposure to regulated environments (CLIA/FDA)