Bioinformatician II

We need to output HTML fragment with sections: headings

for sections like About the role, Responsibilities, Requirements, Qualifications, Skills, Benefits, Pay, Schedule. Only include sections that have real specific content. We must not repeat job title. Remove boilerplate like EEO, legal, etc. Also remove duplicated lines, application instructions. Must preserve all substantive info. Let's parse the posting. First paragraph: description of School of Medicine. This is background, maybe "About the role"? Actually it's about the organization. Could be "About the role" or "About Duke". The instruction: use

for section headings (e.g. About the role, Responsibilities, Requirements, Qualifications, Skills, Benefits, Pay, Schedule). So we can have sections: About the role (or About the organization), Responsibilities, Requirements, Qualifications, Skills, Benefits, Pay, Schedule. We need to include only sections with real content. Let's extract content: - About the role: The description of the lab and position: "Be You. The Heaton Laboratory ... is seeking a highly motivated Bioinformatician II to support multidisciplinary research at the intersection of virology, immunology, cell biology, and exposure biology." Also "Be Bold. About The Position" then bullet list of responsibilities. So we can have About the role: description of lab and mission. - Responsibilities: list after "About The Position": "Design, create, and enhance workflows, databases, front-end interfaces, and other computing tools for tracking, moving, distribution, sharing, integration, and analysis of a variety of multi-omic, phenotypic, clinical and experimental data Contribute to the analysis of single-cell RNA-seq, spatial transcriptomics, and multi-omic datasets Apply computational and machine learning approaches to build mechanistic biological models and rationally design therapeutics Identify solutions and investigate and learn new approaches necessary to adapt existing or new workflows Collaborate with teams of researchers and scientists providing bioinformatics training, consulting, application support and development" These are responsibilities. - Requirements: Minimum Requirements: "PhD in Bioinformatics, Computational Biology, or a related field (or MS with substantial relevant experience)Strong programming skills (e.g., R, Python, or equivalent)Experience in building, maintaining, and working with databases (SQL)Experience analyzing genomic data". Need to separate items. - Preferred Qualifications: list: "Experience integrating high-dimensional datasets (e.g. exposure status, next-generation sequencing, experimental data) to identify outcome-associated signaturesExperience applying computational and machine learning approaches to biological dataStrong communication skills and ability to collaborate in a team-oriented environment" - Skills: maybe combine programming skills etc. But we already have programming skills in Requirements. Could have a Skills section for "Strong communication skills and ability to collaborate in a team-oriented environment" but that's also in Preferred Qualifications. Might be better to have Skills separate: maybe "Strong programming skills (R, Python), Experience with SQL databases, Experience analyzing genomic data, Experience integrating high-dimensional datasets, Experience applying computational and machine learning approaches, Strong communication skills, Ability to collaborate in a team-oriented environment". However we must not invent content; we can list skills derived from the posting. The instruction: Preserve ALL substantive information; do NOT invent or summarize away detail. So we can list each bullet as separate

under Skills if we want. But we need to decide if we want a Skills section. The posting includes programming skills, database experience, genomic data analysis, integrating high-dimensional datasets, ML approaches, communication, collaboration. Those are skills/qualifications. Could put them under Requirements and Preferred Qualifications; we already have those sections. Might not need separate Skills. But we can include Skills if we want, but must not duplicate content. Better to keep Requirements (minimum) and Preferred Qualifications (preferred). Then Benefits: we have benefits description: "Duke's competitive benefits package including health insurance plans, generous paid time off, retirement programs with employer contributions, tuition assistance for employees and their children, and more." Also "Duke provides comprehensive and competitive medical and dental care programs, generous retirement benefits, and a wide array of family-friendly and cultural programs to eligible team members." So we have benefits content. - Pay: The posting says "Anticipated Pay Range: Duke University provides an annual base salary range for this position as USD $0.00 to USD $0.00." That's placeholder zero; it's not real specific content (it's zero). According to rule: never emit a heading followed by filler/placeholder text (e.g., "commensurate with experience", "not specified", "N/A", "varies", "TBD") and never create Pay/Schedule/Benefits sections unless the posting actually states them. Here they state a range but it's $0.00 to $0.00 which is placeholder; likely considered filler. Should we include Pay section? The rule says never create Pay section unless posting actually states them. It does state a range, albeit zero. But it's likely placeholder; but we cannot know if it's real. The rule says never emit a heading followed by filler/placeholder text (e.g., "commensurate with experience", "not specified", "N/A", "varies", "TBD") and never create Pay/Schedule/Benefits sections unless the posting actually states them. The posting does state a range, albeit zero. It's not "not specified" but it's zero; could be considered filler. Safer to omit Pay section because it's not meaningful. The instruction: "Prefer a few substantive sections over many thin ones." So we can omit Pay. - Schedule: Not mentioned. So omit. Thus sections: About the role, Responsibilities, Requirements, Preferred Qualifications, Benefits. We need to use

for each section heading. Use

• for any list of duties/requirements/benefits, and

  for prose. We must not repeat job title. Not include Job ID etc. We must remove boilerplate: EEO statements, legal, etc. Also remove duplicated lines. Let's craft. First, About the role: combine the introductory paragraphs about School of Medicine and Heaton Lab seeking Bioinformatician II. Also maybe include "Be You." and "Be Bold." but those are just headings; we can incorporate. Prose: "Established in 1930, Duke University School of Medicine is the youngest of the nation's top medical schools. Ranked sixth among medical schools in the nation, the School takes pride in being an inclusive community of outstanding learners, investigators, clinicians, and staff where interdisciplinary collaboration is embraced and great ideas accelerate translation of fundamental scientific discoveries to improve human health locally and around the globe. Composed of more than 2,600 faculty physicians and researchers, nearly 2,000 students, and more than 6,200 staff, the Duke University School of Medicine along with the Duke University School of Nursing, and Duke University Health System comprise Duke Health, a world-class academic medical center. The Health System encompasses Duke University Hospital, Duke Regional Hospital, Duke Raleigh Hospital, Duke Health Integrated Practice, Duke Primary Care, Duke Home Care and Hospice, Duke Health and Wellness, and multiple affiliations. Be You. The Heaton Laboratory (https://heaton.labs.duke.edu/), a member of the Duke Center for Virology (https://sites.duke.edu/dukevirology/), is seeking a highly motivated Bioinformatician II to support multidisciplinary research at the intersection of virology, immunology, cell biology, and exposure biology." That's prose. Then Responsibilities: heading

  Responsibilities

  then
  with each responsibility as
  • . List items: - Design, create, and enhance workflows, databases, front-end interfaces, and other computing tools for tracking, moving, distribution, sharing, integration, and analysis of a variety of multi-omic, phenotypic, clinical and experimental data - Contribute to the analysis of single-cell RNA-seq, spatial transcriptomics, and multi-omic datasets - Apply computational and machine learning approaches to build mechanistic biological models and rationally design therapeutics - Identify solutions and investigate and learn new approaches necessary to adapt existing or new workflows - Collaborate with teams of researchers and scientists providing bioinformatics training, consulting, application support and development Make sure to preserve punctuation. Then Requirements: heading

    Requirements

    then
    with items: - PhD in Bioinformatics, Computational Biology, or a related field (or MS with substantial relevant experience) - Strong programming skills (e.g., R, Python, or equivalent) - Experience in building, maintaining, and working with databases (SQL) - Experience analyzing genomic data Note: The original had no punctuation between items; we split. Then Preferred Qualifications: heading

    Preferred Qualifications

    then
    with items: - Experience integrating high-dimensional datasets (e.g. exposure status, next-generation sequencing, experimental data) to identify outcome-associated signatures - Experience applying computational and machine learning approaches to biological data - Strong communication skills and ability to collaborate in a team-oriented environment Then Benefits: heading

    Benefits

    then
    with items: - Health insurance plans - Generous paid time off - Retirement programs with employer contributions - Tuition assistance for employees and their children - Comprehensive medical and dental care programs - Generous retirement benefits - Wide array of family-friendly and cultural programs But note some duplication: retirement programs with employer contributions and generous retirement benefits maybe similar; but we keep as stated. We should avoid duplication: The posting says: "Duke's competitive benefits package including health insurance plans, generous paid time off, retirement programs with employer contributions, tuition assistance for employees and their children, and more." Then later: "Duke provides comprehensive and competitive medical and dental care programs, generous retirement benefits, and a wide array of family-friendly and cultural programs to eligible team members." So we can combine. Make list items distinct. Now ensure we didn't include any boilerplate like EEO, legal, etc. Check for any leftover: The posting also had "Hiring Statements" etc. We removed. Now output only HTML fragment. Let's craft final HTML:

    About the role

    Established in 1930, Duke University School of Medicine is the youngest of the nation's top medical schools. Ranked sixth among medical schools in the nation, the School takes pride in being an inclusive community of outstanding learners, investigators, clinicians, and staff where interdisciplinary collaboration is embraced and great ideas accelerate translation of fundamental scientific discoveries to improve human health locally and around the globe. Composed of more than 2,600 faculty physicians and researchers, nearly 2,000 students, and more than 6,200 staff, the Duke University School of Medicine along with the Duke University School of Nursing, and Duke University Health System comprise Duke Health, a world-class academic medical center. The Health System encompasses Duke University Hospital, Duke Regional Hospital, Duke Raleigh Hospital, Duke Health Integrated Practice, Duke Primary Care, Duke Home Care and Hospice, Duke Health and Wellness, and multiple affiliations. Be You. The Heaton Laboratory (https://heaton.labs.duke.edu/), a member of the Duke Center for Virology (https://sites.duke.edu/dukevirology/), is seeking a highly motivated Bioinformatician II to support multidisciplinary research at the intersection of virology, immunology, cell biology, and exposure biology.

    Responsibilities

    • Design, create, and enhance workflows, databases, front-end interfaces, and other computing tools for tracking, moving, distribution, sharing, integration, and analysis of a variety of multi-omic, phenotypic, clinical and experimental data
    • Contribute to the analysis of single-cell RNA-seq, spatial transcriptomics, and multi-omic datasets
    • Apply computational and machine learning approaches to build mechanistic biological models and rationally design therapeutics
    • Identify solutions and investigate and learn new approaches necessary to adapt existing or new workflows
    • Collaborate with teams of researchers and scientists providing bioinformatics training, consulting, application support