Advisor - Lab Automation Software Engineer

About the role

We are seeking a Lab Automation Software Engineering Advisor to join our biotherapeutics discovery automation team at the Lilly Biotechnology Center in San Diego. You will architect and implement revolutionary software solutions that transform how we discover life-saving biotherapeutics.

Responsibilities

• Design and develop software applications that orchestrate complex automated laboratory workflows and closed-loop learning systems.
• Create data pipelines and visualization tools that provide real-time insights into lab operations and experimental outcomes.
• Implement machine learning models for visual inspection systems, predictive maintenance, and process optimization that enhance operational efficiency.
• Develop and maintain integrations across multiple automation schedulers, LIMS, and data platforms.
• Ensure robust software deployment through best DevOps practices and cloud-based solutions.

Requirements

• Ph.D. in Computer Science, Software Engineering, Bioengineering/Engineering with at least three years of industry experience.
• M.S. in Computer Science, Software Engineering, Bioengineering/Engineering with at least 10 years of experience.
• B.S. in Computer Science, Software Engineering, Bioengineering/Engineering with at least 13 years of experience.

Qualifications

• Strong proficiency in Python, SQL, and JavaScript, with working knowledge of programming/scripting in C#, VBA, R, C++, MATLAB, and Bash.
• Experience with statistical analysis tools (JMP, SAS, R) and business intelligence platforms (Tableau, Power BI, Spotfire).
• Expertise in best DevOps practices, including database management systems (DBMS), data warehousing, software development, cloud computing platforms (AWS, Azure), and version control tools (GitHub, GitLab).
• Experience with lab digitalization technologies (IoT device integration, digital lab twins, automated usage and error reporting telemetry metrics) as well as autonomous lab systems and closed-loop learning frameworks is strongly preferred.
• Familiarity with lab data platforms including Benchling, LabGuru, PostgreSQL, Genedata, or similar LIMS/ELN systems.
• Strong problem-solving skills and ability to work cross-functionally with scientific and engineering teams.

Skills & Preferences

• Strong proficiency in Python, SQL, and JavaScript, with working knowledge of programming/scripting in C#, VBA, R, C++, MATLAB, and Bash.
• Experience with statistical analysis tools (JMP, SAS, R) and business intelligence platforms (Tableau, Power BI, Spotfire).
• Expertise in best DevOps practices, including database management systems (DBMS), data warehousing, software development, cloud computing platforms (AWS, Azure), and version control tools (GitHub, GitLab).
• Experience with lab digitalization technologies (IoT device integration, digital lab twins, automated usage and error reporting telemetry metrics) as well as autonomous lab systems and closed-loop learning frameworks is strongly preferred.
• Familiarity with lab data platforms including Benchling, LabGuru, PostgreSQL, Genedata, or similar LIMS/ELN systems.

Benefits

• Eligibility to participate in a company-sponsored 401(k).
• Pension plan.
• Vacation benefits.
• Medical, dental, vision, and prescription drug benefits.
• Flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts).
• Life insurance and death benefits.
• Certain time off and leave of absence benefits.
• Well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).

Pay

The anticipated wage for this position is $141,000 - $228,800.

Schedule

Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance).